GTModelBeata2015 2020-06-09 07:01
Independent Section Contains tests that are independent of the class of modeled organism, a model's complexity or types of identifiers that are used to describe its components. Parameterization or initialization of the network is not required. See readme for more details.

Consistency


Annotation - Metabolites


Annotation - Reactions


Annotation - Genes


Annotation - SBO Terms





Total Score
87%
Score per Category
0%10%20%30%40%50%60%70%80%90%100%scoreconsistencyannotation_metannotation_rxnannotation_geneannotation_sbosection
Specific Section Covers general statistics and specific aspects of a metabolic network that are not universally applicable. See readme for more details.
SBML
Basic Information
Metabolite Information
Reaction Information
Gene-Protein-Reaction (GPR) Associations
Biomass
Energy Metabolism
Network Topology
Stoichiometrically Balanced Cycles
216

Stoichiometrically Balanced Cycles are artifacts of insufficiently constrained networks resulting in reactions that can carry flux when all the boundaries have been closed. Implementation: Close all model boundary reactions and then use flux variability analysis (FVA) to identify reactions that carry flux.

There are 216 (18.49%) reactions which participate in SBC in the model: IDPh, ATPM, NADDP, GLUSy, ADK1, ...


Matrix Conditioning
Experimental Data Comparison
Misc. Tests
Environment